BAliBASE 4

BAliBASE (Benchmark Alignment dataBASE) is a multiple sequence alignment (MSA) benchmarking reference set. It contains reference alignments based on three-dimensional structures and particular reference sets that contain various linear motifs. The AUthors also provide a program that can compare a test alignment with the BAliBASE reference alignment. See also "links" for BAliBASE.

Topic

Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs

Detail

  • Operation: Multiple sequence alignment;Benchmark

  • Software interface: Command-line user interface

  • Language: C

  • License: -

  • Cost: Free

  • Version name: 4

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Julie Thompson thompson@unistra.fr | Raymond Ripp raymond.ripp@unistra.fr

  • Collection: BAliBASE

  • Maturity: -

Publications

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Download and documentation

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